Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas brassicacearum |
| Strain | DF41 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Triticum aestivum, Solanum lycopersicum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1314978 bp
Thymine Count
1310668 bp
Guanine Count
2010915 bp
Cytosine Count
2015833 bp
Genome Length
6652396 bp
Protein-coding Genes
5688 genes
Non-Coding Genes
147 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ykgj family cysteine cluster protein | CD58_RS01680 | Not Available | Negative | 387722 - 388159 | 16785.4 |
| glycogen/starch/alpha-glucan phosphorylase | CD58_RS01685 | Not Available | Positive | 388412 - 390862 | 92268.9 |
| duf2339 domain-containing protein | CD58_RS01690 | Not Available | Positive | 391157 - 394777 | 130078.0 |
| duf3999 domain-containing protein | CD58_RS01695 | Not Available | Positive | 394774 - 396150 | 49744.1 |
| class 1 fructose-bisphosphatase | CD58_RS01700 | Not Available | Positive | 396384 - 397394 | 37117.4 |
| duf924 family protein | CD58_RS01705 | Not Available | Positive | 397398 - 397994 | 22785.1 |
| type ii toxin-antitoxin system rele/pare family toxin | CD58_RS01710 | Not Available | Negative | 398002 - 398334 | 12678.6 |
| type ii toxin-antitoxin system phd/yefm family antitoxin | CD58_RS01715 | Not Available | Negative | 398331 - 398603 | 10286.3 |
| methyl-accepting chemotaxis protein | CD58_RS01720 | Not Available | Negative | 398742 - 400634 | 67243.0 |
| hypothetical protein | CD58_RS01725 | Not Available | Positive | 400918 - 401172 | 8895.89 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
