Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas brassicacearum |
| Strain | DF41 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Triticum aestivum, Solanum lycopersicum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1314978 bp
Thymine Count
1310668 bp
Guanine Count
2010915 bp
Cytosine Count
2015833 bp
Genome Length
6652396 bp
Protein-coding Genes
5688 genes
Non-Coding Genes
147 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rep-associated tyrosine transposase | CD58_RS21070 | Not Available | Negative | 4947867 - 4948325 | 17637.4 |
| glcg/hbps family heme-binding protein | CD58_RS21075 | Not Available | Negative | 4948535 - 4948975 | 14656.7 |
| glyoxylate carboligase | CD58_RS21080 | Not Available | Positive | 4949243 - 4951018 | 64139.5 |
| hydroxypyruvate isomerase | CD58_RS21085 | Not Available | Positive | 4951155 - 4951937 | 28774.2 |
| 2-hydroxy-3-oxopropionate reductase | CD58_RS21090 | Not Available | Positive | 4952094 - 4952984 | 30629.0 |
| metal abc transporter atp-binding protein | CD58_RS21095 | Not Available | Positive | 4953165 - 4954068 | 31381.8 |
| ion transporter | CD58_RS21100 | Not Available | Positive | 4954090 - 4954914 | 30382.8 |
| sulfate abc transporter substrate-binding protein | CD58_RS21105 | Not Available | Positive | 4955009 - 4956007 | 36593.2 |
| mfs transporter | CD58_RS21110 | Not Available | Positive | 4956233 - 4957438 | 42319.9 |
| pldc n-terminal domain-containing protein | CD58_RS21115 | Not Available | Negative | 4957498 - 4957689 | 6749.85 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
