Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas brassicacearum |
| Strain | DF41 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Triticum aestivum, Solanum lycopersicum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1314978 bp
Thymine Count
1310668 bp
Guanine Count
2010915 bp
Cytosine Count
2015833 bp
Genome Length
6652396 bp
Protein-coding Genes
5688 genes
Non-Coding Genes
147 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pepsy-associated tm helix domain-containing protein | CD58_RS20030 | Not Available | Positive | 4741153 - 4742367 | 45203.8 |
| hypothetical protein | CD58_RS20035 | Not Available | Positive | 4742364 - 4742906 | 19878.1 |
| hypothetical protein | CD58_RS20040 | Not Available | Positive | 4742903 - 4743229 | 11230.3 |
| duf6162 family protein | CD58_RS20045 | Not Available | Positive | 4743226 - 4743801 | 20576.0 |
| metal abc transporter substrate-binding protein | CD58_RS20050 | Not Available | Positive | 4743837 - 4744766 | 33754.5 |
| metal abc transporter atp-binding protein | CD58_RS20055 | Not Available | Positive | 4744763 - 4745515 | 27296.3 |
| metal abc transporter permease | CD58_RS20060 | Not Available | Positive | 4745515 - 4746414 | 30807.1 |
| metal abc transporter solute-binding protein, zn/mn family | CD58_RS20065 | Not Available | Positive | 4746415 - 4747317 | 31561.8 |
| 2-methylaconitate cis-trans isomerase prpf | CD58_RS20070 | Not Available | Negative | 4747726 - 4748916 | 41129.3 |
| fe/s-dependent 2-methylisocitrate dehydratase acnd | CD58_RS20075 | Not Available | Negative | 4748969 - 4751560 | 94206.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
