Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas brassicacearum |
| Strain | DF41 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Triticum aestivum, Solanum lycopersicum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1314978 bp
Thymine Count
1310668 bp
Guanine Count
2010915 bp
Cytosine Count
2015833 bp
Genome Length
6652396 bp
Protein-coding Genes
5688 genes
Non-Coding Genes
147 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transporter substrate-binding domain-containing protein | CD58_RS19780 | Not Available | Negative | 4655626 - 4658847 | 116933.0 |
| lysine n(6)-hydroxylase/l-ornithine n(5)-oxygenase family protein | CD58_RS19785 | Not Available | Negative | 4659192 - 4660526 | 49935.4 |
| sigma-70 family rna polymerase sigma factor | CD58_RS19790 | Not Available | Negative | 4660671 - 4661153 | 18661.5 |
| efflux rnd transporter periplasmic adaptor subunit | CD58_RS19795 | Not Available | Positive | 4661612 - 4662763 | 41461.3 |
| macb family efflux pump subunit | CD58_RS19800 | Not Available | Positive | 4662764 - 4664734 | 69668.4 |
| efflux transporter outer membrane subunit | CD58_RS19805 | Not Available | Positive | 4664745 - 4666139 | 50701.0 |
| metal abc transporter atp-binding protein | CD58_RS19810 | Not Available | Positive | 4666827 - 4667152 | 12506.3 |
| hypothetical protein | CD58_RS19815 | Not Available | Negative | 4667357 - 4668979 | 61608.4 |
| pyoverdine-tailoring dipeptidase-like protein pvdm | CD58_RS19820 | Not Available | Positive | 4669295 - 4670665 | 50135.8 |
| aminotransferase class v-fold plp-dependent enzyme | CD58_RS19825 | Not Available | Positive | 4670662 - 4671942 | 47326.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
