Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas brassicacearum |
| Strain | DF41 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Triticum aestivum, Solanum lycopersicum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1314978 bp
Thymine Count
1310668 bp
Guanine Count
2010915 bp
Cytosine Count
2015833 bp
Genome Length
6652396 bp
Protein-coding Genes
5688 genes
Non-Coding Genes
147 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lytic transglycosylase | CD58_RS18455 | Not Available | Positive | 4359561 - 4360109 | 19795.9 |
| integrating conjugative element protein | CD58_RS18460 | Not Available | Positive | 4360106 - 4360621 | 19036.9 |
| type iv conjugative transfer system coupling protein trad | CD58_RS18465 | Not Available | Positive | 4360630 - 4362735 | 78417.5 |
| tigr03747 family integrating conjugative element membrane protein | CD58_RS18470 | Not Available | Positive | 4362825 - 4363556 | 27146.0 |
| duf3800 domain-containing protein | CD58_RS18475 | Not Available | Negative | 4363631 - 4364713 | 40286.2 |
| hypothetical protein | CD58_RS18480 | Not Available | Negative | 4364764 - 4366515 | 65363.9 |
| raqprd family integrative conjugative element protein | CD58_RS29400 | Not Available | Positive | 4366652 - 4366984 | 12563.8 |
| tigr03758 family integrating conjugative element protein | CD58_RS18490 | Not Available | Positive | 4366981 - 4367220 | 8494.35 |
| tigr03745 family integrating conjugative element membrane protein | CD58_RS18495 | Not Available | Positive | 4367238 - 4367609 | 13177.6 |
| tigr03750 family conjugal transfer protein | CD58_RS18500 | Not Available | Positive | 4367617 - 4368030 | 15117.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
