Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas brassicacearum |
| Strain | DF41 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Triticum aestivum, Solanum lycopersicum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1314978 bp
Thymine Count
1310668 bp
Guanine Count
2010915 bp
Cytosine Count
2015833 bp
Genome Length
6652396 bp
Protein-coding Genes
5688 genes
Non-Coding Genes
147 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| amino acid permease | CD58_RS15630 | Not Available | Negative | 3727507 - 3728907 | 50252.4 |
| tetr/acrr family transcriptional regulator | CD58_RS15635 | Not Available | Positive | 3729287 - 3729898 | 23173.8 |
| polyamine abc transporter substrate-binding protein | CD58_RS15640 | Not Available | Negative | 3729947 - 3731050 | 40657.8 |
| alginate export family protein | CD58_RS15645 | Not Available | Negative | 3731089 - 3732423 | 48763.1 |
| serine hydrolase domain-containing protein | CD58_RS15650 | Not Available | Negative | 3732543 - 3733805 | 46035.2 |
| response regulator transcription factor | CD58_RS15655 | Not Available | Positive | 3734083 - 3734463 | 13630.5 |
| sigma-54 interaction domain-containing protein | CD58_RS15660 | Not Available | Positive | 3734669 - 3735772 | 40930.4 |
| abc transporter atp-binding protein | CD58_RS15665 | Not Available | Negative | 3735822 - 3736583 | 27588.4 |
| abc transporter substrate-binding protein | CD58_RS15670 | Not Available | Negative | 3736641 - 3737966 | 48165.2 |
| branched-chain amino acid abc transporter permease | CD58_RS15675 | Not Available | Negative | 3738038 - 3739105 | 38688.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
