Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas brassicacearum |
| Strain | DF41 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Triticum aestivum, Solanum lycopersicum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1314978 bp
Thymine Count
1310668 bp
Guanine Count
2010915 bp
Cytosine Count
2015833 bp
Genome Length
6652396 bp
Protein-coding Genes
5688 genes
Non-Coding Genes
147 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type iii secretion system stator protein sctl | CD58_RS15330 | Not Available | Negative | 3540905 - 3541480 | 21647.6 |
| type iii secretion system inner membrane ring lipoprotein sctj | CD58_RS15335 | Not Available | Negative | 3542023 - 3542826 | 28864.2 |
| type iii secretion system inner rod subunit scti | CD58_RS15340 | Not Available | Negative | 3542834 - 3543190 | 12664.1 |
| hypothetical protein | CD58_RS28780 | Not Available | Negative | 3543243 - 3544127 | 30102.5 |
| hypothetical protein | CD58_RS15350 | Not Available | Negative | 3544189 - 3544551 | 12212.3 |
| sigma 54-interacting transcriptional regulator | CD58_RS15355 | Not Available | Negative | 3544583 - 3545560 | 35478.2 |
| cest family type iii secretion system chaperone | CD58_RS15360 | Not Available | Positive | 3546162 - 3546605 | 16399.6 |
| hypothetical protein | CD58_RS15365 | Not Available | Positive | 3546791 - 3548656 | 65884.1 |
| hypothetical protein | CD58_RS15370 | Not Available | Negative | 3548747 - 3549211 | 16862.6 |
| helix-turn-helix transcriptional regulator | CD58_RS15375 | Not Available | Negative | 3549413 - 3549964 | 19921.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
