Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas brassicacearum |
| Strain | DF41 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Triticum aestivum, Solanum lycopersicum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1314978 bp
Thymine Count
1310668 bp
Guanine Count
2010915 bp
Cytosine Count
2015833 bp
Genome Length
6652396 bp
Protein-coding Genes
5688 genes
Non-Coding Genes
147 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type iii secretion system export apparatus subunit scts | CD58_RS15280 | Not Available | Positive | 3532867 - 3533133 | 9366.97 |
| type iii secretion system export apparatus subunit sctt | CD58_RS15285 | Not Available | Positive | 3533133 - 3533927 | 28825.9 |
| type iii secretion system export apparatus subunit sctu | CD58_RS15290 | Not Available | Positive | 3533924 - 3535000 | 40254.8 |
| cest family type iii secretion system chaperone | CD58_RS15295 | Not Available | Positive | 3535143 - 3536021 | 31650.9 |
| hypothetical protein | CD58_RS15300 | Not Available | Positive | 3536009 - 3537430 | 50463.2 |
| hypothetical protein | CD58_RS15305 | Not Available | Negative | 3537524 - 3537871 | 13077.5 |
| hrpt family type iii secretion system protein | CD58_RS15310 | Not Available | Negative | 3537877 - 3538086 | 7599.99 |
| type iii secretion system outer membrane ring subunit sctc | CD58_RS15315 | Not Available | Negative | 3538083 - 3540164 | 75156.5 |
| hypothetical protein | CD58_RS15320 | Not Available | Negative | 3540166 - 3540591 | 15222.1 |
| type iii secretion protein | CD58_RS15325 | Not Available | Negative | 3540578 - 3540802 | 7831.19 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
