Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas brassicacearum |
| Strain | DF41 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Triticum aestivum, Solanum lycopersicum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1314978 bp
Thymine Count
1310668 bp
Guanine Count
2010915 bp
Cytosine Count
2015833 bp
Genome Length
6652396 bp
Protein-coding Genes
5688 genes
Non-Coding Genes
147 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aspartyl/asparaginyl beta-hydroxylase domain-containing protein | CD58_RS00965 | Not Available | Positive | 228422 - 229207 | 29396.9 |
| aspartyl beta-hydroxylase | CD58_RS00970 | Not Available | Positive | 229195 - 230184 | 37091.6 |
| metal abc transporter atp-binding protein | CD58_RS29760 | Not Available | Negative | 230303 - 230424 | 4668.55 |
| duf2789 domain-containing protein | CD58_RS00975 | Not Available | Positive | 230529 - 230774 | 9148.89 |
| type ii toxin-antitoxin system phd/yefm family antitoxin | CD58_RS00980 | Not Available | Positive | 230834 - 231079 | 8840.79 |
| metal abc transporter atp-binding protein | CD58_RS00985 | Not Available | Positive | 231069 - 231345 | 9998.22 |
| alpha/beta hydrolase | CD58_RS00990 | Not Available | Positive | 231465 - 232046 | 21326.3 |
| metal abc transporter atp-binding protein | CD58_RS00995 | Not Available | Positive | 232094 - 232909 | 29593.4 |
| hypothetical protein | CD58_RS01000 | Not Available | Positive | 233270 - 234226 | 36096.9 |
| rhs repeat domain-containing protein | CD58_RS01005 | Not Available | Positive | 234252 - 238988 | 173600.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
