Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas brassicacearum |
| Strain | DF41 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Triticum aestivum, Solanum lycopersicum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1314978 bp
Thymine Count
1310668 bp
Guanine Count
2010915 bp
Cytosine Count
2015833 bp
Genome Length
6652396 bp
Protein-coding Genes
5688 genes
Non-Coding Genes
147 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna ligase d | CD58_RS13085 | Not Available | Negative | 3008285 - 3010282 | 74249.7 |
| ku protein | CD58_RS13090 | Not Available | Negative | 3010315 - 3011205 | 32801.5 |
| hypothetical protein | CD58_RS13095 | Not Available | Positive | 3011406 - 3011747 | 11995.3 |
| pqq-dependent sugar dehydrogenase | CD58_RS13100 | Not Available | Positive | 3011795 - 3012943 | 41740.6 |
| threonine ammonia-lyase, biosynthetic | CD58_RS13105 | Not Available | Positive | 3013173 - 3014240 | 37602.3 |
| duf1652 domain-containing protein | CD58_RS13110 | Not Available | Positive | 3014553 - 3014852 | 11260.5 |
| carbohydrate kinase family protein | CD58_RS13115 | Not Available | Negative | 3014945 - 3015883 | 33826.4 |
| xylulokinase | CD58_RS13120 | Not Available | Negative | 3015896 - 3017383 | 51932.1 |
| mannitol dehydrogenase family protein | CD58_RS13125 | Not Available | Negative | 3017598 - 3019079 | 54734.1 |
| abc transporter atp-binding protein | CD58_RS13130 | Not Available | Negative | 3019095 - 3020198 | 39775.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
