Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas brassicacearum |
| Strain | DF41 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Triticum aestivum, Solanum lycopersicum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1314978 bp
Thymine Count
1310668 bp
Guanine Count
2010915 bp
Cytosine Count
2015833 bp
Genome Length
6652396 bp
Protein-coding Genes
5688 genes
Non-Coding Genes
147 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rida family protein | CD58_RS12740 | Not Available | Positive | 2922487 - 2922897 | 15203.2 |
| duf1028 domain-containing protein | CD58_RS12745 | Not Available | Positive | 2922908 - 2923582 | 23052.3 |
| acetylornithine deacetylase | CD58_RS12750 | Not Available | Positive | 2923575 - 2924744 | 41363.7 |
| abc transporter substrate-binding protein | CD58_RS12755 | Not Available | Positive | 2924926 - 2925966 | 37536.6 |
| lysr substrate-binding domain-containing protein | CD58_RS12760 | Not Available | Negative | 2926157 - 2927068 | 33583.4 |
| helix-turn-helix domain-containing protein | CD58_RS12765 | Not Available | Positive | 2927333 - 2928325 | 37177.6 |
| transporter | CD58_RS12770 | Not Available | Positive | 2928395 - 2929327 | 34102.2 |
| mfs transporter | CD58_RS12775 | Not Available | Positive | 2929338 - 2930594 | 43633.0 |
| amidase | CD58_RS12780 | Not Available | Positive | 2930612 - 2932069 | 51928.0 |
| pig-l deacetylase family protein | CD58_RS12785 | Not Available | Negative | 2933044 - 2933808 | 28298.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
