Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas brassicacearum |
| Strain | DF41 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Triticum aestivum, Solanum lycopersicum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1314978 bp
Thymine Count
1310668 bp
Guanine Count
2010915 bp
Cytosine Count
2015833 bp
Genome Length
6652396 bp
Protein-coding Genes
5688 genes
Non-Coding Genes
147 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | CD58_RS12000 | Not Available | Negative | 2742787 - 2743269 | 18079.4 |
| type vi secretion system atpase tssh | CD58_RS12005 | Not Available | Negative | 2743314 - 2745857 | 92361.0 |
| type vi secretion system baseplate subunit tssg | CD58_RS12010 | Not Available | Negative | 2745859 - 2746884 | 37152.7 |
| type vi secretion system baseplate subunit tssf | CD58_RS12015 | Not Available | Negative | 2746848 - 2748638 | 65836.5 |
| type vi secretion system baseplate subunit tsse | CD58_RS12020 | Not Available | Negative | 2748622 - 2749065 | 16768.9 |
| hcp family type vi secretion system effector | CD58_RS12025 | Not Available | Negative | 2749078 - 2749575 | 17621.0 |
| type vi secretion system contractile sheath large subunit | CD58_RS12030 | Not Available | Negative | 2749761 - 2751242 | 54946.2 |
| type vi secretion system contractile sheath small subunit | CD58_RS12035 | Not Available | Negative | 2751273 - 2751833 | 20942.8 |
| hypothetical protein | CD58_RS12045 | Not Available | Positive | 2752058 - 2752510 | 17024.2 |
| type vi secretion system baseplate subunit tssk | CD58_RS12050 | Not Available | Positive | 2752575 - 2753906 | 48063.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
