Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas brassicacearum |
| Strain | DF41 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Triticum aestivum, Solanum lycopersicum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1314978 bp
Thymine Count
1310668 bp
Guanine Count
2010915 bp
Cytosine Count
2015833 bp
Genome Length
6652396 bp
Protein-coding Genes
5688 genes
Non-Coding Genes
147 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| metal abc transporter atp-binding protein | CD58_RS11950 | Not Available | Negative | 2729845 - 2732768 | 104471.0 |
| metal abc transporter atp-binding protein | CD58_RS11955 | Not Available | Negative | 2732922 - 2733946 | 35757.2 |
| helix-turn-helix domain-containing protein | CD58_RS11960 | Not Available | Positive | 2733941 - 2734504 | 20747.6 |
| fad/nad(p)-binding protein | CD58_RS11965 | Not Available | Positive | 2734522 - 2735952 | 51817.2 |
| gfo/idh/moca family protein | CD58_RS11970 | Not Available | Negative | 2736138 - 2737250 | 40235.8 |
| sdr family oxidoreductase | CD58_RS11975 | Not Available | Negative | 2737484 - 2738251 | 26665.3 |
| phosphotransferase family protein | CD58_RS11980 | Not Available | Negative | 2738276 - 2739343 | 40803.8 |
| duf4280 domain-containing protein | CD58_RS11985 | Not Available | Positive | 2739541 - 2739936 | 13205.7 |
| toxin-antitoxin system ywqk family antitoxin | CD58_RS11990 | Not Available | Negative | 2740139 - 2740681 | 20206.6 |
| type vi secretion system tip protein vgrg | CD58_RS11995 | Not Available | Negative | 2740695 - 2742704 | 72633.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
