Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas brassicacearum |
| Strain | DF41 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Triticum aestivum, Solanum lycopersicum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1314978 bp
Thymine Count
1310668 bp
Guanine Count
2010915 bp
Cytosine Count
2015833 bp
Genome Length
6652396 bp
Protein-coding Genes
5688 genes
Non-Coding Genes
147 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| alpha-ketoacid dehydrogenase subunit beta | CD58_RS11695 | Not Available | Negative | 2674033 - 2675091 | 38517.9 |
| 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) subunit alpha | CD58_RS11700 | Not Available | Negative | 2675093 - 2676328 | 45370.2 |
| bkd operon transcriptional regulator bkdr | CD58_RS11705 | Not Available | Positive | 2676521 - 2677009 | 18240.3 |
| uvrd-helicase domain-containing protein | CD58_RS11710 | Not Available | Negative | 2677049 - 2679562 | 94012.3 |
| aldose 1-epimerase | CD58_RS11720 | Not Available | Negative | 2679829 - 2680698 | 31891.2 |
| trap transporter large permease | CD58_RS11725 | Not Available | Negative | 2680895 - 2682175 | 45330.2 |
| trap transporter small permease | CD58_RS11730 | Not Available | Negative | 2682175 - 2682702 | 19240.4 |
| trap transporter substrate-binding protein | CD58_RS11735 | Not Available | Negative | 2682778 - 2683746 | 35408.1 |
| smp-30/gluconolactonase/lre family protein | CD58_RS11740 | Not Available | Negative | 2683805 - 2684710 | 32669.5 |
| nad-dependent epimerase/dehydratase family protein | CD58_RS11745 | Not Available | Negative | 2684754 - 2685575 | 30268.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
