Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas brassicacearum |
| Strain | DF41 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Triticum aestivum, Solanum lycopersicum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1314978 bp
Thymine Count
1310668 bp
Guanine Count
2010915 bp
Cytosine Count
2015833 bp
Genome Length
6652396 bp
Protein-coding Genes
5688 genes
Non-Coding Genes
147 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nadp-dependent isocitrate dehydrogenase | CD58_RS10700 | Not Available | Negative | 2450315 - 2452540 | 80231.0 |
| nadp-dependent isocitrate dehydrogenase | CD58_RS10705 | Not Available | Positive | 2453022 - 2454278 | 45464.8 |
| cold shock domain-containing protein | CD58_RS10710 | Not Available | Negative | 2454357 - 2454626 | 9713.57 |
| atp-dependent clp protease adapter clps | CD58_RS10715 | Not Available | Positive | 2454853 - 2455215 | 13579.2 |
| atp-dependent clp protease atp-binding subunit clpa | CD58_RS10720 | Not Available | Positive | 2455245 - 2457515 | 83393.9 |
| translation initiation factor if-1 | CD58_RS10725 | Not Available | Negative | 2457750 - 2457968 | 8303.06 |
| arginyltransferase | CD58_RS10730 | Not Available | Negative | 2458069 - 2458776 | 27845.4 |
| leucyl/phenylalanyl-trna--protein transferase | CD58_RS10735 | Not Available | Negative | 2458834 - 2459514 | 25475.5 |
| dna translocase ftsk | CD58_RS10740 | Not Available | Positive | 2459949 - 2462354 | 87831.0 |
| outer membrane lipoprotein chaperone lola | CD58_RS10745 | Not Available | Positive | 2462412 - 2463035 | 22658.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
