Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas brassicacearum |
| Strain | DF41 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Triticum aestivum, Solanum lycopersicum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1314978 bp
Thymine Count
1310668 bp
Guanine Count
2010915 bp
Cytosine Count
2015833 bp
Genome Length
6652396 bp
Protein-coding Genes
5688 genes
Non-Coding Genes
147 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cbb3-type cytochrome oxidase assembly protein ccos | CD58_RS09140 | Not Available | Negative | 2106120 - 2106338 | 7763.08 |
| heavy metal translocating p-type atpase | CD58_RS09145 | Not Available | Negative | 2106363 - 2108813 | 87808.9 |
| fixh family protein | CD58_RS09150 | Not Available | Negative | 2108977 - 2109516 | 20231.1 |
| cytochrome c oxidase accessory protein ccog | CD58_RS09155 | Not Available | Negative | 2109528 - 2110943 | 53578.1 |
| hypothetical protein | CD58_RS31395 | Not Available | Positive | 2111270 - 2111443 | 5765.08 |
| duf6124 family protein | CD58_RS09160 | Not Available | Negative | 2111606 - 2111965 | 13196.6 |
| hypothetical protein | CD58_RS09165 | Not Available | Negative | 2112631 - 2113641 | 39162.5 |
| rhs repeat-associated core domain-containing protein | CD58_RS09170 | Not Available | Negative | 2113648 - 2118045 | 163219.0 |
| type ii toxin-antitoxin system vapc family toxin | CD58_RS09175 | Not Available | Negative | 2118131 - 2118541 | 14921.0 |
| type ii toxin-antitoxin system phd/yefm family antitoxin | CD58_RS09180 | Not Available | Negative | 2118541 - 2118795 | 9184.93 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
