Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas brassicacearum |
| Strain | DF41 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Triticum aestivum, Solanum lycopersicum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1314978 bp
Thymine Count
1310668 bp
Guanine Count
2010915 bp
Cytosine Count
2015833 bp
Genome Length
6652396 bp
Protein-coding Genes
5688 genes
Non-Coding Genes
147 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| winged helix-turn-helix domain-containing protein | CD58_RS08640 | Not Available | Positive | 1977416 - 1978645 | 46444.8 |
| class ii 3-deoxy-7-phosphoheptulonate synthase | CD58_RS08645 | Not Available | Negative | 1978779 - 1980125 | 49956.3 |
| spermidine synthase | CD58_RS08650 | Not Available | Positive | 1980281 - 1981036 | 28048.7 |
| dead/deah box helicase | CD58_RS08655 | Not Available | Positive | 1981526 - 1983199 | 60662.6 |
| doda-type extradiol aromatic ring-opening family dioxygenase | CD58_RS08660 | Not Available | Negative | 1983415 - 1984182 | 27555.7 |
| thiopurine s-methyltransferase | CD58_RS08665 | Not Available | Positive | 1984286 - 1984939 | 24505.3 |
| protease htpx | CD58_RS08675 | Not Available | Negative | 1985517 - 1986404 | 32418.9 |
| pyridoxal phosphate-dependent aminotransferase | CD58_RS08680 | Not Available | Negative | 1986707 - 1987918 | 44861.2 |
| peptide-methionine (r)-s-oxide reductase msrb | CD58_RS08685 | Not Available | Positive | 1988139 - 1988531 | 14575.4 |
| glutathione peroxidase | CD58_RS08690 | Not Available | Positive | 1988805 - 1989290 | 17567.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
