Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas brassicacearum |
| Strain | DF41 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Triticum aestivum, Solanum lycopersicum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1314978 bp
Thymine Count
1310668 bp
Guanine Count
2010915 bp
Cytosine Count
2015833 bp
Genome Length
6652396 bp
Protein-coding Genes
5688 genes
Non-Coding Genes
147 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| udp-n-acetylglucosamine 4,6-dehydratase (inverting) | CD58_RS08360 | Not Available | Positive | 1920636 - 1921634 | 37400.8 |
| udp-4-amino-4, 6-dideoxy-n-acetyl-beta-l-altrosamine transaminase | CD58_RS08365 | Not Available | Positive | 1921638 - 1922798 | 43233.9 |
| pseudaminic acid cytidylyltransferase | CD58_RS08370 | Not Available | Positive | 1922795 - 1923502 | 26817.9 |
| udp-2,4-diacetamido-2,4, 6-trideoxy-beta-l-altropyranose hydrolase | CD58_RS08375 | Not Available | Positive | 1923499 - 1924611 | 40437.6 |
| udp-4-amino-4, 6-dideoxy-n-acetyl-beta-l-altrosamine n-acetyltransferase | CD58_RS08380 | Not Available | Positive | 1924613 - 1925134 | 20125.9 |
| pseudaminic acid synthase | CD58_RS08385 | Not Available | Positive | 1925146 - 1926207 | 38170.4 |
| hypothetical protein | CD58_RS08390 | Not Available | Positive | 1926240 - 1927157 | 34801.4 |
| o-antigen ligase family protein | CD58_RS08395 | Not Available | Positive | 1927241 - 1928398 | 43063.6 |
| acyltransferase | CD58_RS08400 | Not Available | Positive | 1928398 - 1928895 | 18057.1 |
| polysaccharide biosynthesis c-terminal domain-containing protein | CD58_RS08405 | Not Available | Positive | 1928879 - 1930102 | 45335.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
