Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas brassicacearum |
| Strain | DF41 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Triticum aestivum, Solanum lycopersicum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1314978 bp
Thymine Count
1310668 bp
Guanine Count
2010915 bp
Cytosine Count
2015833 bp
Genome Length
6652396 bp
Protein-coding Genes
5688 genes
Non-Coding Genes
147 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| (d)cmp kinase | CD58_RS08310 | Not Available | Positive | 1909022 - 1909711 | 24471.4 |
| 30s ribosomal protein s1 | CD58_RS08315 | Not Available | Positive | 1909832 - 1911526 | 62507.1 |
| hypothetical protein | CD58_RS08320 | Not Available | Positive | 1911754 - 1912032 | 10013.2 |
| integration host factor subunit beta | CD58_RS08325 | Not Available | Positive | 1912177 - 1912473 | 11042.3 |
| lipopolysaccharide assembly protein lapa domain-containing protein | CD58_RS08330 | Not Available | Positive | 1912499 - 1912723 | 8265.7 |
| lps o-antigen chain length determinant protein wzzb | CD58_RS08335 | Not Available | Positive | 1912916 - 1913989 | 39425.4 |
| polysaccharide biosynthesis protein | CD58_RS08340 | Not Available | Positive | 1914513 - 1916507 | 73371.1 |
| transcription/translation regulatory transformer protein rfah | CD58_RS08345 | Not Available | Positive | 1917039 - 1917560 | 19678.9 |
| non-hydrolyzing udp-n-acetylglucosamine 2-epimerase | CD58_RS08350 | Not Available | Positive | 1918064 - 1919185 | 40839.0 |
| udp-n-acetyl-d-mannosamine dehydrogenase | CD58_RS08355 | Not Available | Positive | 1919282 - 1920553 | 46017.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
