Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas brassicacearum |
| Strain | DF41 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Triticum aestivum, Solanum lycopersicum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1314978 bp
Thymine Count
1310668 bp
Guanine Count
2010915 bp
Cytosine Count
2015833 bp
Genome Length
6652396 bp
Protein-coding Genes
5688 genes
Non-Coding Genes
147 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dtdp-4-dehydrorhamnose 3,5-epimerase | CD58_RS07810 | Not Available | Positive | 1802531 - 1803091 | 20721.4 |
| class i sam-dependent methyltransferase | CD58_RS07815 | Not Available | Positive | 1803088 - 1804314 | 44752.5 |
| nad-dependent epimerase/dehydratase family protein | CD58_RS07820 | Not Available | Positive | 1804311 - 1805168 | 31292.4 |
| class i sam-dependent methyltransferase | CD58_RS07825 | Not Available | Positive | 1805158 - 1806228 | 39448.8 |
| cephalosporin hydroxylase family protein | CD58_RS07830 | Not Available | Positive | 1806244 - 1806981 | 27691.2 |
| tigr00180 family glycosyltransferase | CD58_RS07835 | Not Available | Positive | 1807033 - 1809966 | 109923.0 |
| udp-4-amino-4, 6-dideoxy-n-acetyl-beta-l-altrosamine transaminase | CD58_RS07840 | Not Available | Positive | 1810069 - 1811238 | 42442.1 |
| pseudaminic acid cytidylyltransferase | CD58_RS07845 | Not Available | Positive | 1811327 - 1812028 | 26068.4 |
| udp-2,4-diacetamido-2,4, 6-trideoxy-beta-l-altropyranose hydrolase | CD58_RS07850 | Not Available | Positive | 1812025 - 1813530 | 54991.8 |
| pseudaminic acid synthase | CD58_RS07855 | Not Available | Positive | 1813523 - 1814575 | 37766.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
