Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas brassicacearum |
| Strain | DF41 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Triticum aestivum, Solanum lycopersicum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1314978 bp
Thymine Count
1310668 bp
Guanine Count
2010915 bp
Cytosine Count
2015833 bp
Genome Length
6652396 bp
Protein-coding Genes
5688 genes
Non-Coding Genes
147 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| choline abc transporter substrate-binding protein | CD58_RS00330 | Not Available | Positive | 72928 - 73848 | 33171.8 |
| sulp family inorganic anion transporter | CD58_RS00335 | Not Available | Positive | 74044 - 75612 | 55949.8 |
| shikimate dehydrogenase | CD58_RS00340 | Not Available | Negative | 75739 - 76560 | 29015.9 |
| oxygen-dependent coproporphyrinogen oxidase | CD58_RS00345 | Not Available | Negative | 76574 - 77488 | 34626.5 |
| nadph:quinone reductase | CD58_RS00350 | Not Available | Positive | 77818 - 78795 | 34425.1 |
| l-threonylcarbamoyladenylate synthase | CD58_RS00355 | Not Available | Negative | 79219 - 79776 | 20669.8 |
| dna-processing protein dpra | CD58_RS00360 | Not Available | Negative | 79837 - 80937 | 38904.8 |
| lysm peptidoglycan-binding domain-containing protein | CD58_RS00365 | Not Available | Negative | 81018 - 82043 | 37369.8 |
| peptide deformylase | CD58_RS00370 | Not Available | Positive | 82211 - 82717 | 19327.3 |
| methionyl-trna formyltransferase | CD58_RS00375 | Not Available | Positive | 82789 - 83748 | 33713.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
