Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas brassicacearum |
| Strain | DF41 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Triticum aestivum, Solanum lycopersicum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1314978 bp
Thymine Count
1310668 bp
Guanine Count
2010915 bp
Cytosine Count
2015833 bp
Genome Length
6652396 bp
Protein-coding Genes
5688 genes
Non-Coding Genes
147 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| succinate dehydrogenase assembly factor 2 | CD58_RS07175 | Not Available | Positive | 1647241 - 1647495 | 10274.5 |
| protein ygfx | CD58_RS07180 | Not Available | Positive | 1647479 - 1647931 | 17092.1 |
| l-aspartate oxidase | CD58_RS07185 | Not Available | Negative | 1647900 - 1649516 | 59595.9 |
| rna polymerase sigma factor rpoe | CD58_RS07190 | Not Available | Positive | 1650076 - 1650657 | 22252.3 |
| sigma-e factor negative regulatory protein | CD58_RS07195 | Not Available | Positive | 1650688 - 1651275 | 20893.8 |
| mucb/rseb c-terminal domain-containing protein | CD58_RS07200 | Not Available | Positive | 1651285 - 1652232 | 34519.0 |
| degq family serine endoprotease | CD58_RS07205 | Not Available | Positive | 1652463 - 1653896 | 50699.3 |
| m48 family metalloprotease | CD58_RS07210 | Not Available | Negative | 1653960 - 1655393 | 53008.4 |
| sulfurtransferase tusa family protein | CD58_RS07215 | Not Available | Positive | 1655492 - 1655731 | 8671.33 |
| ai-2e family transporter | CD58_RS07220 | Not Available | Positive | 1655762 - 1656832 | 39563.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
