Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas brassicacearum |
| Strain | DF41 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Triticum aestivum, Solanum lycopersicum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1314978 bp
Thymine Count
1310668 bp
Guanine Count
2010915 bp
Cytosine Count
2015833 bp
Genome Length
6652396 bp
Protein-coding Genes
5688 genes
Non-Coding Genes
147 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| protocatechuate 3,4-dioxygenase subunit alpha | CD58_RS06830 | Not Available | Positive | 1571218 - 1571784 | 20643.3 |
| mfs family transporter | CD58_RS06835 | Not Available | Positive | 1572113 - 1573411 | 47322.6 |
| 3-carboxy-cis,cis-muconate cycloisomerase | CD58_RS06840 | Not Available | Positive | 1573564 - 1574928 | 48681.7 |
| 3-oxoadipate enol-lactonase | CD58_RS06845 | Not Available | Positive | 1574941 - 1575741 | 28787.4 |
| 4-carboxymuconolactone decarboxylase | CD58_RS06850 | Not Available | Positive | 1575752 - 1576144 | 14734.6 |
| oprd family porin | CD58_RS06855 | Not Available | Negative | 1576371 - 1577624 | 45764.4 |
| duf6124 family protein | CD58_RS06865 | Not Available | Positive | 1578964 - 1579314 | 12754.0 |
| adec/adek/oprm family multidrug efflux complex outer membrane factor | CD58_RS06870 | Not Available | Negative | 1579610 - 1581067 | 52486.6 |
| efflux rnd transporter permease subunit emhb | CD58_RS06875 | Not Available | Negative | 1581064 - 1584228 | 113225.0 |
| efflux rnd transporter periplasmic adaptor subunit | CD58_RS06880 | Not Available | Negative | 1584232 - 1585389 | 41056.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
