Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas brassicacearum |
| Strain | DF41 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Triticum aestivum, Solanum lycopersicum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1314978 bp
Thymine Count
1310668 bp
Guanine Count
2010915 bp
Cytosine Count
2015833 bp
Genome Length
6652396 bp
Protein-coding Genes
5688 genes
Non-Coding Genes
147 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lysoplasmalogenase | CD58_RS05395 | Not Available | Negative | 1266987 - 1267622 | 22635.6 |
| protease inhibitor i42 family protein | CD58_RS05400 | Not Available | Negative | 1267625 - 1268017 | 13887.6 |
| endopeptidase la | CD58_RS05405 | Not Available | Negative | 1268232 - 1270646 | 89144.5 |
| mfs transporter | CD58_RS05410 | Not Available | Negative | 1270796 - 1272109 | 46209.1 |
| cnnm domain-containing protein | CD58_RS05415 | Not Available | Negative | 1272536 - 1273777 | 46090.1 |
| inner membrane protein ypjd | CD58_RS05420 | Not Available | Negative | 1273790 - 1274602 | 29466.2 |
| signal recognition particle protein | CD58_RS05425 | Not Available | Positive | 1274809 - 1276185 | 49393.9 |
| 30s ribosomal protein s16 | CD58_RS05430 | Not Available | Positive | 1276437 - 1276688 | 9236.07 |
| ribosome maturation factor rimm | CD58_RS05435 | Not Available | Positive | 1276694 - 1277230 | 20106.2 |
| trna (guanosine(37)-n1)-methyltransferase trmd | CD58_RS05440 | Not Available | Positive | 1277212 - 1277985 | 28758.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
