Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas brassicacearum |
| Strain | DF41 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Triticum aestivum, Solanum lycopersicum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1314978 bp
Thymine Count
1310668 bp
Guanine Count
2010915 bp
Cytosine Count
2015833 bp
Genome Length
6652396 bp
Protein-coding Genes
5688 genes
Non-Coding Genes
147 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nad-dependent succinate-semialdehyde dehydrogenase | CD58_RS04920 | Not Available | Positive | 1164387 - 1165874 | 53458.4 |
| aspartate aminotransferase family protein | CD58_RS04925 | Not Available | Positive | 1165871 - 1167256 | 50197.2 |
| alkaline phosphatase d family protein | CD58_RS04930 | Not Available | Negative | 1167644 - 1169461 | 68326.8 |
| trap transporter substrate-binding protein | CD58_RS04935 | Not Available | Negative | 1169776 - 1170771 | 37367.1 |
| type vi secretion system amidase effector protein tae4 | CD58_RS04940 | Not Available | Positive | 1170947 - 1171459 | 19540.1 |
| hypothetical protein | CD58_RS04945 | Not Available | Positive | 1171456 - 1171683 | 8319.29 |
| metal abc transporter atp-binding protein | CD58_RS30000 | Not Available | Positive | 1171733 - 1171822 | 3060.72 |
| mandelate racemase family protein | CD58_RS04950 | Not Available | Positive | 1172217 - 1173371 | 42165.3 |
| metal abc transporter atp-binding protein | CD58_RS04955 | Not Available | Positive | 1173443 - 1175064 | 57099.7 |
| abc transporter permease | CD58_RS04960 | Not Available | Positive | 1175099 - 1176136 | 37492.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
