Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas brassicacearum |
| Strain | DF41 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Triticum aestivum, Solanum lycopersicum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1314978 bp
Thymine Count
1310668 bp
Guanine Count
2010915 bp
Cytosine Count
2015833 bp
Genome Length
6652396 bp
Protein-coding Genes
5688 genes
Non-Coding Genes
147 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ectoine/hydroxyectoine abc transporter atp-binding protein ehua | CD58_RS04870 | Not Available | Negative | 1154317 - 1155111 | 29186.5 |
| ectoine/hydroxyectoine abc transporter permease subunit ehud | CD58_RS04875 | Not Available | Negative | 1155186 - 1155842 | 24454.6 |
| ectoine/hydroxyectoine abc transporter permease subunit ehuc | CD58_RS04880 | Not Available | Negative | 1155839 - 1156498 | 24249.4 |
| ectoine/hydroxyectoine abc transporter substrate-binding protein ehub | CD58_RS04885 | Not Available | Negative | 1156579 - 1157436 | 30542.7 |
| plp-dependent aminotransferase family protein | CD58_RS04890 | Not Available | Positive | 1157727 - 1159121 | 52301.7 |
| hydroxyectoine utilization dehydratase eutb | CD58_RS04895 | Not Available | Positive | 1159360 - 1160331 | 33694.7 |
| cyclodeaminase | CD58_RS04900 | Not Available | Positive | 1160363 - 1161355 | 34876.1 |
| ectoine hydrolase doea | CD58_RS04905 | Not Available | Positive | 1161396 - 1162586 | 44126.0 |
| n(2)-acetyl-l-2,4-diaminobutanoate deacetylase doeb | CD58_RS04910 | Not Available | Positive | 1162590 - 1163591 | 35506.5 |
| lrp/asnc family transcriptional regulator | CD58_RS04915 | Not Available | Positive | 1163777 - 1164256 | 18088.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
