Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas brassicacearum |
| Strain | DF41 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Triticum aestivum, Solanum lycopersicum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1314978 bp
Thymine Count
1310668 bp
Guanine Count
2010915 bp
Cytosine Count
2015833 bp
Genome Length
6652396 bp
Protein-coding Genes
5688 genes
Non-Coding Genes
147 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| toxin | CD58_RS04820 | Not Available | Positive | 1145576 - 1145920 | 13652.5 |
| helix-turn-helix domain-containing protein | CD58_RS04825 | Not Available | Positive | 1145917 - 1146231 | 11809.5 |
| hypothetical protein | CD58_RS04830 | Not Available | Negative | 1146425 - 1147129 | 25959.1 |
| duf72 domain-containing protein | CD58_RS04835 | Not Available | Negative | 1147269 - 1148012 | 27921.3 |
| sensor domain-containing diguanylate cyclase | CD58_RS04840 | Not Available | Negative | 1148105 - 1149118 | 39092.3 |
| lysr family transcriptional regulator | CD58_RS04845 | Not Available | Negative | 1149240 - 1150157 | 33998.2 |
| acetylornithine transaminase | CD58_RS04850 | Not Available | Positive | 1150256 - 1151431 | 42343.4 |
| mfs transporter | CD58_RS04855 | Not Available | Negative | 1151397 - 1152638 | 43049.4 |
| winged helix-turn-helix transcriptional regulator | CD58_RS04860 | Not Available | Positive | 1152742 - 1153194 | 16804.2 |
| ompa family protein | CD58_RS04865 | Not Available | Positive | 1153336 - 1154073 | 25592.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
