Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas brassicacearum |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Triticum aestivum, Solanum lycopersicum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pseudomonas brassicacearum strain 36D4 36D4_contig_130, whole
Gene Summary
Adenine Count
1376901 bp
Thymine Count
1384632 bp
Guanine Count
2125714 bp
Cytosine Count
2109743 bp
Genome Length
6998324 bp
Protein-coding Genes
5862 genes
Non-Coding Genes
104 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 3d-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing) | BK659_12195 | Not Available | Negative | 2785660 - 2787591 | 70288.0 |
| xylose isomerase | BK659_12200 | Not Available | Negative | 2787729 - 2788550 | 30021.0 |
| methylmalonate-semialdehyde dehydrogenase (acylating) | BK659_12205 | Not Available | Negative | 2788578 - 2790080 | 53686.5 |
| 5-deoxy-glucuronate isomerase | BK659_12210 | Not Available | Negative | 2790111 - 2790920 | 29416.7 |
| myo-inosose-2 dehydratase | BK659_12215 | Not Available | Negative | 2790917 - 2791810 | 32597.8 |
| 5-dehydro-2-deoxygluconokinase | BK659_12220 | Not Available | Negative | 2791963 - 2793900 | 71194.5 |
| rpir family transcriptional regulator | BK659_12225 | Not Available | Positive | 2794213 - 2795133 | 34400.0 |
| patatin | BK659_12230 | Not Available | Negative | 2795106 - 2796008 | 31544.2 |
| glutathione s-transferase | BK659_12235 | Not Available | Positive | 2796286 - 2796897 | 22581.4 |
| hypothetical protein | BK659_12240 | Not Available | Negative | 2797100 - 2797402 | 11146.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
