Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas brassicacearum |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Triticum aestivum, Solanum lycopersicum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pseudomonas brassicacearum strain 36D4 36D4_contig_130, whole
Gene Summary
Adenine Count
1376901 bp
Thymine Count
1384632 bp
Guanine Count
2125714 bp
Cytosine Count
2109743 bp
Genome Length
6998324 bp
Protein-coding Genes
5862 genes
Non-Coding Genes
104 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type vi secretion protein | BK659_11885 | Not Available | Negative | 2708895 - 2709995 | 41681.8 |
| type vi secretion system protein impl | BK659_11890 | Not Available | Negative | 2709992 - 2713810 | 143002.0 |
| type vi secretion system protein impk | BK659_11895 | Not Available | Negative | 2713807 - 2714574 | 28590.9 |
| type vi secretion system-associated protein | BK659_11900 | Not Available | Negative | 2714593 - 2715924 | 48360.2 |
| type vi secretion protein | BK659_11905 | Not Available | Negative | 2715988 - 2716437 | 16702.0 |
| type vi secretion system-associated protein | BK659_11910 | Not Available | Positive | 2716664 - 2717245 | 21225.2 |
| evpb family type vi secretion protein | BK659_11915 | Not Available | Positive | 2717274 - 2718761 | 55184.6 |
| type vi secretion effector protein (hcp) | BK659_11920 | Not Available | Positive | 2718836 - 2719336 | 17721.1 |
| type vi secretion protein | BK659_11925 | Not Available | Positive | 2719352 - 2719795 | 16838.0 |
| type vi secretion system protein impg | BK659_11930 | Not Available | Positive | 2719779 - 2721569 | 65782.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
