Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas brassicacearum |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Triticum aestivum, Solanum lycopersicum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pseudomonas brassicacearum strain 36D4 36D4_contig_130, whole
Gene Summary
Adenine Count
1376901 bp
Thymine Count
1384632 bp
Guanine Count
2125714 bp
Cytosine Count
2109743 bp
Genome Length
6998324 bp
Protein-coding Genes
5862 genes
Non-Coding Genes
104 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type ii secretion system protein e | BK654_25105 | Not Available | Positive | 5719275 - 5721389 | 80624.6 |
| bacteriophage n4 adsorption protein a | BK654_25110 | Not Available | Positive | 5721386 - 5723194 | 65805.8 |
| hypothetical protein | BK654_25115 | Not Available | Positive | 5723282 - 5724154 | 31694.1 |
| hypothetical protein | BK654_25120 | Not Available | Positive | 5724431 - 5724793 | 12715.6 |
| homoprotocatechuate degradation operon regulator, hpar | BK654_25125 | Not Available | Negative | 5724887 - 5725309 | 16228.7 |
| 4-hydroxyphenylacetate catabolism regulatory protein hpaa | BK654_25130 | Not Available | Negative | 5725372 - 5726277 | 34533.3 |
| 4-hydroxyphenylacetate isomerase | BK654_25135 | Not Available | Positive | 5726463 - 5727140 | 24352.1 |
| 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase | BK654_25140 | Not Available | Positive | 5727137 - 5727907 | 28624.9 |
| 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase | BK654_25145 | Not Available | Positive | 5727913 - 5729373 | 52762.4 |
| 3,4-dihydroxyphenylacetate 2,3-dioxygenase | BK654_25150 | Not Available | Positive | 5729618 - 5730475 | 31829.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
