Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas brassicacearum |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Triticum aestivum, Solanum lycopersicum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pseudomonas brassicacearum strain 36D4 36D4_contig_130, whole
Gene Summary
Adenine Count
1376901 bp
Thymine Count
1384632 bp
Guanine Count
2125714 bp
Cytosine Count
2109743 bp
Genome Length
6998324 bp
Protein-coding Genes
5862 genes
Non-Coding Genes
104 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type vi secretion system-associated protein | BK654_22375 | Not Available | Negative | 5049928 - 5051262 | 48535.0 |
| type vi secretion system-associated lipoprotein | BK654_22380 | Not Available | Negative | 5051278 - 5051784 | 18174.6 |
| type vi secretion protein | BK654_22385 | Not Available | Negative | 5051853 - 5053307 | 53210.3 |
| type vi secretion protein impa | BK654_22390 | Not Available | Positive | 5053724 - 5054761 | 37340.8 |
| type vi secretion system-associated protein | BK654_22395 | Not Available | Positive | 5054843 - 5055358 | 18728.6 |
| evpb family type vi secretion protein | BK654_22400 | Not Available | Positive | 5055373 - 5056869 | 55698.6 |
| hcp1 family type vi secretion system effector | BK654_22405 | Not Available | Positive | 5057099 - 5057587 | 17494.0 |
| hypothetical protein | BK654_22410 | Not Available | Positive | 5057669 - 5058121 | 17180.5 |
| hypothetical protein | BK654_22415 | Not Available | Positive | 5058121 - 5058546 | 15503.8 |
| type vi secretion system lysozyme | BK654_22420 | Not Available | Positive | 5058540 - 5059052 | 18672.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
