Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas brassicacearum |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Triticum aestivum, Solanum lycopersicum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pseudomonas brassicacearum strain 36D4 36D4_contig_130, whole
Gene Summary
Adenine Count
1376901 bp
Thymine Count
1384632 bp
Guanine Count
2125714 bp
Cytosine Count
2109743 bp
Genome Length
6998324 bp
Protein-coding Genes
5862 genes
Non-Coding Genes
104 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type vi secretion system protein impl | BK654_17145 | Not Available | Negative | 3934668 - 3938492 | 143050.0 |
| type vi secretion system protein impk | BK654_17150 | Not Available | Negative | 3938489 - 3939250 | 28372.0 |
| type vi secretion system-associated protein | BK654_17155 | Not Available | Negative | 3939269 - 3940600 | 47956.9 |
| type vi secretion protein | BK654_17160 | Not Available | Negative | 3940665 - 3941117 | 17020.2 |
| hypothetical protein | BK654_17165 | Not Available | Negative | 3941142 - 3941327 | 6948.67 |
| type vi secretion system-associated protein | BK654_17170 | Not Available | Positive | 3941342 - 3941902 | 20942.8 |
| evpb family type vi secretion protein | BK654_17175 | Not Available | Positive | 3941933 - 3943414 | 54946.2 |
| type vi secretion effector protein (hcp) | BK654_17180 | Not Available | Positive | 3943640 - 3944137 | 17621.0 |
| type vi secretion protein | BK654_17185 | Not Available | Positive | 3944150 - 3944593 | 16687.7 |
| type vi secretion system protein impg | BK654_17190 | Not Available | Positive | 3944577 - 3946367 | 65873.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
