Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas brassicacearum |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Triticum aestivum, Solanum lycopersicum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pseudomonas brassicacearum strain 36D4 36D4_contig_130, whole
Gene Summary
Adenine Count
1376901 bp
Thymine Count
1384632 bp
Guanine Count
2125714 bp
Cytosine Count
2109743 bp
Genome Length
6998324 bp
Protein-coding Genes
5862 genes
Non-Coding Genes
104 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| iron abc transporter permease | BK664_00780 | Not Available | Positive | 211705 - 213303 | 56884.3 |
| abc transporter atp-binding protein | BK664_00785 | Not Available | Positive | 213300 - 214370 | 38328.0 |
| integrase | BK664_00790 | Not Available | Negative | 214381 - 215319 | 35567.8 |
| udp-4-amino-4-deoxy-l-arabinose--oxoglutarate aminotransferase | BK664_00795 | Not Available | Positive | 215709 - 216857 | 41997.4 |
| undecaprenyl-phosphate 4-deoxy-4-formamido-l-arabinose transferase | BK664_00800 | Not Available | Positive | 216854 - 217873 | 37576.8 |
| bifunctional udp-glucuronic acid oxidase/udp-4-amino-4-deoxy-l-arabinose formyltransferase | BK664_00805 | Not Available | Positive | 217870 - 219861 | 73977.3 |
| 4-deoxy-4-formamido-l-arabinose- phosphoundecaprenol deformylase | BK664_00810 | Not Available | Positive | 219861 - 220745 | 32843.3 |
| 4-amino-4-deoxy-l-arabinose lipid a transferase | BK664_00815 | Not Available | Positive | 220742 - 222391 | 61822.4 |
| 4-amino-4-deoxy-l-arabinose-phospho-udp flippase | BK664_00820 | Not Available | Positive | 222388 - 222732 | 12706.2 |
| 4-amino-4-deoxy-l-arabinose-phospho-udp flippase | BK664_00825 | Not Available | Positive | 222729 - 223130 | 14419.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
