Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas brassicacearum |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Triticum aestivum, Solanum lycopersicum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pseudomonas brassicacearum strain 36D4 36D4_contig_130, whole
Gene Summary
Adenine Count
1376901 bp
Thymine Count
1384632 bp
Guanine Count
2125714 bp
Cytosine Count
2109743 bp
Genome Length
6998324 bp
Protein-coding Genes
5862 genes
Non-Coding Genes
104 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 3-oxoadipate--succinyl-coa transferase subunit a | BK658_11795 | Not Available | Positive | 2557271 - 2558128 | 30951.0 |
| 3-oxoadipate--succinyl-coa transferase subunit b | BK658_11800 | Not Available | Positive | 2558128 - 2558907 | 26940.2 |
| 3-oxoadipyl-coa thiolase | BK658_11805 | Not Available | Positive | 2558907 - 2560109 | 41624.1 |
| protocatechuate 3,4-dioxygenase subunit beta | BK658_11810 | Not Available | Positive | 2560149 - 2560853 | 26221.9 |
| protocatechuate 3,4-dioxygenase subunit alpha | BK658_11815 | Not Available | Positive | 2560855 - 2561421 | 20820.6 |
| alpha-ketoglutarate permease | BK658_11820 | Not Available | Positive | 2561707 - 2563002 | 47085.2 |
| 3-carboxy-cis,cis-muconate cycloisomerase | BK658_11825 | Not Available | Positive | 2563052 - 2564413 | 48776.1 |
| 3-oxoadipate enol-lactonase | BK658_11830 | Not Available | Positive | 2564426 - 2565226 | 28736.3 |
| 4-carboxymuconolactone decarboxylase | BK658_11835 | Not Available | Positive | 2565237 - 2565629 | 14721.6 |
| polysaccharide deacetylase | BK658_11840 | Not Available | Negative | 2565705 - 2566604 | 32997.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
