Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas brassicacearum |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Triticum aestivum, Solanum lycopersicum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pseudomonas brassicacearum strain 36D4 36D4_contig_130, whole
Gene Summary
Adenine Count
1376901 bp
Thymine Count
1384632 bp
Guanine Count
2125714 bp
Cytosine Count
2109743 bp
Genome Length
6998324 bp
Protein-coding Genes
5862 genes
Non-Coding Genes
104 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type vi secretion system-associated protein | BK658_03825 | Not Available | Positive | 799136 - 799645 | 18528.4 |
| evpb family type vi secretion protein | BK658_03830 | Not Available | Positive | 799661 - 801154 | 55554.4 |
| hcp1 family type vi secretion system effector | BK658_03835 | Not Available | Positive | 801242 - 801730 | 17522.1 |
| hypothetical protein | BK658_03840 | Not Available | Positive | 801813 - 802271 | 17476.8 |
| hypothetical protein | BK658_03845 | Not Available | Positive | 802268 - 802717 | 16287.7 |
| type vi secretion system lysozyme | BK658_03850 | Not Available | Positive | 802711 - 803223 | 18664.3 |
| type vi secretion system protein impg | BK658_03855 | Not Available | Positive | 803220 - 805079 | 69166.5 |
| type vi secretion protein | BK658_03860 | Not Available | Positive | 805043 - 806095 | 39668.1 |
| clpv1 family t6ss atpase | BK658_03865 | Not Available | Positive | 806088 - 808766 | 97998.8 |
| hypothetical protein | BK658_03870 | Not Available | Negative | 808918 - 809181 | 10261.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
