Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas brassicacearum |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Triticum aestivum, Solanum lycopersicum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pseudomonas brassicacearum strain 36D4 36D4_contig_130, whole
Gene Summary
Adenine Count
1376901 bp
Thymine Count
1384632 bp
Guanine Count
2125714 bp
Cytosine Count
2109743 bp
Genome Length
6998324 bp
Protein-coding Genes
5862 genes
Non-Coding Genes
104 genes
# of Chromosomes/Plasmids
4
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| muconolactone delta-isomerase | BK658_01125 | Not Available | Negative | 225750 - 226040 | 11293.7 |
| muconate cycloisomerase | BK658_01130 | Not Available | Negative | 226051 - 227199 | 41120.7 |
| lysr family transcriptional regulator | BK658_01135 | Not Available | Positive | 227327 - 228217 | 32633.7 |
| ribonuclease hi | BK658_01140 | Not Available | Negative | 228237 - 228689 | 16880.0 |
| sam-dependent methyltransferase | BK658_01145 | Not Available | Negative | 228782 - 229540 | 28023.1 |
| hydroxyacylglutathione hydrolase | BK658_01150 | Not Available | Positive | 229606 - 230373 | 28036.1 |
| lytic transglycosylase | BK658_01155 | Not Available | Positive | 230473 - 231900 | 53360.0 |
| abc transporter substrate-binding protein | BK658_01160 | Not Available | Positive | 232156 - 233982 | 69618.8 |
| hypothetical protein | BK658_01165 | Not Available | Positive | 233979 - 235820 | 69908.9 |
| microcin abc transporter permease | BK658_01170 | Not Available | Positive | 235822 - 236895 | 39493.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
