Salmonella enterica subsp. enterica serovar Alachua str. R6-377

Gram-negativeSpirillaNon-motileMicroaerophilic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Salmonella

Description

Salmonella enterica subsp. enterica serovar Alachua str. R6-377 is a Gram-negative, microaerophilic bacterium characterized by its spirilla shape and tendency to form chains or exist as singles. This strain thrives optimally at a temperature of 37.0°C, which aligns with the typical physiological conditions found within host organisms. As a chemoorganotroph, S. enterica serovar Alachua utilizes organic compounds as its energy source, indicating a reliance on host-derived nutrients for growth and survival. The specific habitat of this strain is host-associated, suggesting an ecological niche that may involve interactions with the host's microbiota or immune system. Given its microaerophilic nature, S. enterica serovar Alachua likely occupies environments within the host that have limited oxygen availability, which could influence its metabolic processes and interactions with other microbial species present. Understanding the unique adaptations of Salmonella enterica serovar Alachua str. R6-377, particularly its growth in microaerophilic conditions within a host, may provide insights into its ecological role and potential responses to host immune mechanisms. This context is crucial for further investigations into its biology and the implications for host-microbe interactions.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusSalmonella
SpeciesSalmonella enterica
Strainsubsp. enterica serovar Alachua R6-377

Profile

Physiology
Gram staining propertiesNegative
ShapeSpirilla
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Salmonella enterica subsp. enterica serovar Alachua str. R6-377
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsMicroaerophilic
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementChains - Singles
SporulationNot Available
Energy sourceChemoorganotroph
PathogenicityNot Available

Genome Summary

Salmonella enterica subsp. enterica serovar Alachua str. R6-377

Gene Summary

Adenine Count

1117000 bp

Thymine Count

1114739 bp

Guanine Count

1219440 bp

Cytosine Count

1219623 bp

Genome Length

4671261 bp

Protein-coding Genes

5096 genes

Non-Coding Genes

68 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
integraseLTSEALA_5423P39347Positive3921130 - 392154616160.7
integraseLTSEALA_5424Not AvailablePositive3921550 - 392183010547.2
putative inner membrane proteinLTSEALA_5425Not AvailablePositive3922493 - 392351939333.8
reverse transcriptaseLTSEALA_5426P0DV94Positive3923519 - 392445436072.9
multidrug efflux system protein mdtlLTSEALA_5427B4SYB3Positive3925288 - 392647542063.9
putative lysr-family transcriptional regulator yidzLTSEALA_5428B5EYX8Positive3926444 - 392740337086.2
hypothetical proteinLTSEALA_5429P0ADM9Positive3927561 - 392831628096.0
putative phosphatase yiehLTSEALA_5434P31467Positive3930520 - 393118524554.7
phosphate transport system regulatory protein phouLTSEALA_5435O32488Negative3931250 - 393197527450.2
phosphate transport atp-binding protein pstbLTSEALA_5436Q5PKW4Negative3931990 - 393279930308.3

Displaying genes 4361 – 4370 of 5164 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

318 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm00005275-oxopentanoateC5H7O3Chemical structure of 5-oxopentanoateNot available
Average115.109Da
Monoisotopic115.040067665Da

Displaying 1–10 of 318 metabolites

Health Effects

No health effects information available for this bacterium.