Prevotella dentalis DSM 3688

Gram-negativeNon-motileAnaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Prevotellaceae

Genus

Prevotella

Description

Prevotella dentalis DSM 3688 is a Gram-negative, anaerobic bacterium that thrives in temperatures ranging from mesophilic to thermophilic, falling under the category of moderate-temperature preference. It is a heterotroph that derives its energy from the breakdown of organic compounds, specifically utilizing a fermentative metabolism. This microbe produces ATP through the process of substrate-level phosphorylation, which involves the conversion of one molecule of substrate into another, resulting in the release of energy. In terms of its morphology, Prevotella dentalis DSM 3688 displays a unique rod-shaped structure, with a length of around 0.5-1.2 μm and a width of 0.3-0.6 μm. It has a capacity to colonize various body sites, including the oral cavity, where it is typically found in the dental plaque. This microbe is an obligate anaerobe, meaning it is unable to survive in the presence of oxygen. It exhibits a preference for a low-oxygen environment, characteristic of anaerobic microorganisms. The absence of oxygen allows Prevotella dentalis DSM 3688 to thrive, utilizing alternative metabolic pathways to generate energy. Interestingly, the species has been associated with various oral diseases, including periodontitis, a chronic inflammatory condition affecting the gums and surrounding tissues. Further research has revealed that Prevotella dentalis DSM 3688 plays a critical role in the development of this disease, highlighting the importance of understanding the interactions between microorganisms and their host. Despite its role in oral health, Prevotella dentalis DSM 3688 has also been linked to the breakdown of complex carbohydrates, such as cellulose, contributing to its ecological significance in dental plaque ecosystems. Overall, this microbe's unique characteristics and metabolic capabilities make it an important component of the oral microbiome, warranting further investigation to better comprehend its mechanisms and interactions.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyPrevotellaceae
GenusPrevotella
SpeciesPrevotella dentalis
StrainDSM 3688

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNo
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobic
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHost gut
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityNot Available

Genome Summary

Prevotella dentalis DSM 3688 contig00073, whole genome shotgun

Gene Summary

Adenine Count

713146 bp

Thymine Count

710199 bp

Guanine Count

897576 bp

Cytosine Count

919429 bp

Genome Length

3240350 bp

Protein-coding Genes

2766 genes

Non-Coding Genes

61 genes

# of Chromosomes/Plasmids

5

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
duf5686 family proteinPREDE_RS09900Not AvailableNegative655339 - 65738479721.6
ribosomal protection-like abc-f family proteinPREDE_RS09905Not AvailableNegative657398 - 65920369419.6
ribosome biogenesis gtp-binding protein yiha/ysxcPREDE_RS09910Not AvailableNegative659203 - 65981723109.0
isoleucine--trna ligasePREDE_RS09915Not AvailablePositive659918 - 663550137502.0
trar/dksa family transcriptional regulatorPREDE_RS09920Not AvailablePositive663623 - 66400314591.5
lipoprotein signal peptidasePREDE_RS09925Not AvailablePositive664000 - 66468625673.8
duf4296 domain-containing proteinPREDE_RS09930Not AvailablePositive664683 - 66560333026.2
dipeptidasePREDE_RS09935Not AvailablePositive665632 - 66727861411.0
phosphodiesterasePREDE_RS09940Not AvailableNegative667392 - 66794019774.0
rna polymerase sigma factor rpod/sigaPREDE_RS09945Not AvailableNegative667948 - 66867327409.8

Displaying genes 4881 – 4890 of 5491 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

134 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm00006985-dehydro-2-deoxy-D-gluconateC6H9O6Chemical structure of 5-dehydro-2-deoxy-D-gluconateNot available
Average177.133Da
Monoisotopic177.04046159Da
BASm00008763-hydroxypyruvateC3H3O4Chemical structure of 3-hydroxypyruvateNot available
Average103.054Da
Monoisotopic103.003682157Da
BASm0000908propanoateC3H5O2Chemical structure of propanoateNot available
Average73.072Da
Monoisotopic73.029502981Da
BASm0000976enol-oxaloacetateC4H2O5Chemical structure of enol-oxaloacetateNot available
Average130.056Da
Monoisotopic129.9913203Da
BASm0001035indole-3-pyruvateC11H8NO3Chemical structure of indole-3-pyruvate35656-49-6
Average202.1861Da
Monoisotopic202.0504181Da
BASm0001111keto-D-tagaturonateC6H9O7Chemical structure of keto-D-tagaturonateNot available
Average193.132Da
Monoisotopic193.0353762Da

Displaying 1–10 of 134 metabolites

Health Effects

No health effects information available for this bacterium.