Treponema brennaborense DSM 12168

Gram-negativeSpirillaMotileAnaerobic

Kingdom

Pseudomonadati

Phylum

Spirochaetota

Class

Spirochaetia

Order

Spirochaetales

Family

Treponemataceae

Genus

Treponema

Description

This strain is part of the GEBA (A Genomic Encyclopedia of Bacteria and Archaea) project. (NCBI BioProject: bp_list[1])

Taxonomy

KingdomPseudomonadati
PhylumSpirochaetota
ClassSpirochaetia
OrderSpirochaetales
FamilyTreponemataceae
GenusTreponema
SpeciesTreponema brennaborense
StrainDSM 12168

Profile

Physiology
Gram staining propertiesNegative
ShapeSpirilla
MobilityYes
Flagellar presenceYes
Number of membranesNot Available
Image of Treponema brennaborense DSM 12168
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobic
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Treponema brennaborense DSM 12168, complete sequence.

Gene Summary

Adenine Count

742160 bp

Thymine Count

740623 bp

Guanine Count

786282 bp

Cytosine Count

786515 bp

Genome Length

3055580 bp

Protein-coding Genes

2585 genes

Non-Coding Genes

62 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
helix-turn-helix transcriptional regulatorTREBR_RS09250Not AvailableNegative2111394 - 211230534557.7
helix-turn-helix domain-containing proteinTREBR_RS09260Not AvailablePositive2112975 - 211356221401.7
spl family radical sam proteinTREBR_RS09265Not AvailableNegative2113568 - 211444032809.8
methyl-accepting chemotaxis proteinTREBR_RS09270Not AvailableNegative2114455 - 211611059158.3
bifunctional gnat family n-acetyltransferase/class i sam-dependent methyltransferaseTREBR_RS14425Not AvailablePositive2116297 - 211742141675.7
rpn family recombination-promoting nuclease/putative transposaseTREBR_RS13755Not AvailablePositive2117911 - 211877432152.1
glycosyltransferase family 4 proteinTREBR_RS09295Not AvailableNegative2119571 - 212079747060.3
wbuc family cupin fold metalloproteinTREBR_RS09300Not AvailableNegative2120925 - 212131414936.1
non-hydrolyzing udp-n-acetylglucosamine 2-epimeraseTREBR_RS09305Not AvailableNegative2121311 - 212245342984.8
dtdp-4-dehydrorhamnose reductase family proteinTREBR_RS09310Not AvailableNegative2122460 - 212334132779.4

Displaying genes 1841 – 1850 of 2647 in total

Metabolites

158 records
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Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da
BASm0001661Cu(2+)CuChemical structure of Cu(2+)7440-50-8
Average63.546Da
Monoisotopic62.929601079Da
BASm00016962-heptyl-3-hydroxy-4(1H)-quinoloneC16H21NO2Chemical structure of 2-heptyl-3-hydroxy-4(1H)-quinoloneNot available
Average259.349Da
Monoisotopic259.15722892Da
BASm0001808corynebactinC39H42N6O18Chemical structure of corynebactinNot available
Average882.789Da
Monoisotopic882.2555585Da
BASm0002146(1R,2S)-1,2-dihydronaphthalene-1,2-diolC10H10O2Chemical structure of (1R,2S)-1,2-dihydronaphthalene-1,2-diolNot available
Average162.1852Da
Monoisotopic162.0680796Da
BASm0002198beta-D-ribofuranoseC5H10O5Chemical structure of beta-D-ribofuranose50-69-1
Average150.1299Da
Monoisotopic150.05282343Da

Displaying 1–10 of 158 metabolites

Health Effects

No health effects information available for this bacterium.