Microbacterium sediminis str. YLB-01

Rod

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micrococcales

Family

Microbacteriaceae

Genus

Microbacterium

Description

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyMicrobacteriaceae
GenusMicrobacterium
SpeciesMicrobacterium sediminis
StrainYLB-01

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Microbacterium sediminis strain YLB-01 Scaffold9_1, whole genome

Gene Summary

Adenine Count

386383 bp

Thymine Count

389502 bp

Guanine Count

989527 bp

Cytosine Count

994549 bp

Genome Length

2759961 bp

Protein-coding Genes

2529 genes

Non-Coding Genes

48 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
carbohydrate abc transporter permeaseE3O41_RS13185Not AvailableNegative2769497 - 277039633168.1
carbohydrate abc transporter permeaseE3O41_RS13190Not AvailableNegative2770393 - 277130733228.0
iclr family transcriptional regulatorE3O41_RS13195Not AvailablePositive2771417 - 277219327566.2
hypothetical proteinE3O41_RS13200Not AvailablePositive2772253 - 277272616422.8
thioredoxin-disulfide reductaseE3O41_RS13205Not AvailablePositive2772812 - 277377733737.1
thioredoxinE3O41_RS13210Not AvailablePositive2773836 - 277415911775.2
tryptophan synthase subunit alphaE3O41_RS13215Not AvailableNegative2774241 - 277459413560.2
response regulatorE3O41_RS13220Not AvailableNegative2774604 - 277533226007.4
sensor histidine kinaseE3O41_RS13225Not AvailableNegative2775332 - 277692755605.5
bug family tripartite tricarboxylate transporter substrate binding proteinE3O41_RS13230Not AvailablePositive2777101 - 277812634383.0

Displaying genes 5381 – 5390 of 5404 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

212 records
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Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000275keto-D-sorboseC6H12O6Chemical structure of keto-D-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da

Displaying 1–10 of 212 metabolites

Health Effects

No health effects information available for this bacterium.