Microbacterium sediminis str. YLB-01

Rod

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micrococcales

Family

Microbacteriaceae

Genus

Microbacterium

Description

Taxonomy

Kingdom	Bacillati
Phylum	Actinomycetota
Class	Actinomycetes
Order	Micrococcales
Family	Microbacteriaceae
Genus	Microbacterium
Species	Microbacterium sediminis
Strain	YLB-01

Profile

Physiology
Gram staining properties	Not Available
Shape	Rod
Mobility	Not Available
Flagellar presence	Not Available
Number of membranes	Not Available

Ecology, Host, and Life Cycle
Oxygen requirements	Not Available
Optimal temperature	Not Available
Temperature range	Not Available
Habitat	Not Available
Biotic relationship	Not Available
Host(s)	Not Available
Cell arrangement	Not Available
Sporulation	Not Available
Energy source	Not Available
Pathogenicity	Not Available

Genome Summary

Microbacterium sediminis strain YLB-01 Scaffold9_1, whole genome

LXMD00000000.1 NZ_CP038257.1 NZ_CP038256.1

Gene Summary

Adenine Count

386383 bp

Thymine Count

389502 bp

Guanine Count

989527 bp

Cytosine Count

994549 bp

Genome Length

2759961 bp

Protein-coding Genes

2529 genes

Non-Coding Genes

48 genes

# of Chromosomes/Plasmids

Genes

Name	Locus Tag	UniProt ID	Strand Orientation	Gene Start/End	Protein Molecular Weight
5s ribosomal rna	Not Available	Not Available	Positive	1927876 - 1927992	Not Available
23s ribosomal rna	Not Available	Not Available	Positive	1928094 - 1931200	Not Available
16s ribosomal rna	Not Available	Not Available	Positive	1931559 - 1933083	Not Available
tyrosine--trna ligase	E3O41_RS09220	Not Available	Negative	1933587 - 1934888	46414.5
argininosuccinate lyase	E3O41_RS09225	Not Available	Negative	1934921 - 1936348	50988.4
heparan-alpha-glucosaminide n-acetyltransferase domain-containing protein	E3O41_RS09230	Not Available	Negative	1936358 - 1937491	39455.7
ornithine carbamoyltransferase	E3O41_RS09235	Not Available	Negative	1937493 - 1938416	33296.4
acetylornithine transaminase	E3O41_RS09240	Not Available	Negative	1938413 - 1939618	41959.0
acetylglutamate kinase	E3O41_RS09245	Not Available	Negative	1939615 - 1940517	32061.8
bifunctional glutamate n-acetyltransferase/amino-acid acetyltransferase argj	E3O41_RS09250	Not Available	Negative	1940514 - 1941671	39564.4

Displaying genes 4581 – 4590 of 5404 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolite ID	Metabolite name	CAS number	Average mass Monoisotopic mass
BASm0000217	alpha-ribazoleC14H18N2O4	Not available	Average278.3037Da Monoisotopic278.126657074Da
BASm0000237	(R)-4'-phosphopantothenateC9H18NO8P	Not available	Average299.2149Da Monoisotopic299.0770031Da
BASm0000250	2,5-didehydro-D-gluconateC6H7O7	`53736-12-2`	Average191.1156Da Monoisotopic191.019177578Da
BASm0000254	3-hydroxy-2-methylpropanoateC4H7O3	Not available	Average103.098Da Monoisotopic103.0400677Da
BASm0000259	3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5	Not available	Average405.556Da Monoisotopic405.264647871Da
BASm0000272	(E)-4-coumarateC9H7O3	Not available	Average163.1501Da Monoisotopic163.0395191Da
BASm0000275	keto-D-sorboseC6H12O6	Not available	Average180.1559Da Monoisotopic180.0633881Da
BASm0000277	keto-L-sorboseC6H12O6	Not available	Average180.1559Da Monoisotopic180.0633881Da
BASm0000377	(S)-malateC4H4O5	Not available	Average132.0716Da Monoisotopic132.005873238Da
BASm0000387	(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6	Not available	Average455.432Da Monoisotopic455.1564286Da

Displaying 1–10 of 212 metabolites

Health Effects

No health effects information available for this bacterium.