Microbacterium sediminis str. YLB-01

Rod

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micrococcales

Family

Microbacteriaceae

Genus

Microbacterium

Description

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyMicrobacteriaceae
GenusMicrobacterium
SpeciesMicrobacterium sediminis
StrainYLB-01

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Microbacterium sediminis strain YLB-01 Scaffold9_1, whole genome

Gene Summary

Adenine Count

386383 bp

Thymine Count

389502 bp

Guanine Count

989527 bp

Cytosine Count

994549 bp

Genome Length

2759961 bp

Protein-coding Genes

2529 genes

Non-Coding Genes

48 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
duf3040 domain-containing proteinE3O41_RS09010Not AvailableNegative1890365 - 189075713627.5
polyprenyl synthetase family proteinE3O41_RS09015Not AvailablePositive1890824 - 189191238445.1
rv2175c family dna-binding proteinE3O41_RS09020Not AvailableNegative1891914 - 189224311891.3
lysm peptidoglycan-binding domain-containing proteinE3O41_RS09025Not AvailablePositive1892446 - 189352536555.4
stk1 family pasta domain-containing ser/thr kinaseE3O41_RS09030Not AvailablePositive1893574 - 189553569830.7
class ii 3-deoxy-7-phosphoheptulonate synthaseE3O41_RS09035Not AvailableNegative1895717 - 189705149028.1
lysophospholipid acyltransferase family proteinE3O41_RS09040Not AvailableNegative1897104 - 189781425945.8
amp-dependent synthetase/ligaseE3O41_RS09045Not AvailablePositive1897937 - 189976365815.7
hypothetical proteinE3O41_RS09050Not AvailablePositive1899832 - 190023014528.0
duf3500 domain-containing proteinE3O41_RS09055Not AvailableNegative1900247 - 190150043458.3

Displaying genes 4541 – 4550 of 5404 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

212 records
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Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000275keto-D-sorboseC6H12O6Chemical structure of keto-D-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da

Displaying 1–10 of 212 metabolites

Health Effects

No health effects information available for this bacterium.