Cyclobacterium marinum DSM 745

sphere

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Cyclobacteriaceae

Genus

Cyclobacterium

Description

This organism is part of the GEBA (A Genomic Encyclopedia of Bacteria and Archaea) project. (NCBI BioProject: bp_list[1])

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilyCyclobacteriaceae
GenusCyclobacterium
SpeciesCyclobacterium marinum
StrainDSM 745

Profile

Physiology
Gram staining propertiesGram-negative
Shapesphere
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperature29
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceorganotroph; chemotroph
PathogenicityNot Available

Genome Summary

Cyclobacterium marinum DSM 745, complete sequence.

Gene Summary

Adenine Count

1929800 bp

Thymine Count

1918302 bp

Guanine Count

1186539 bp

Cytosine Count

1186632 bp

Genome Length

6221273 bp

Protein-coding Genes

4959 genes

Non-Coding Genes

51 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinCYCMA_RS08870Not AvailablePositive2098880 - 209924214021.1
exodeoxyribonuclease iiiCYCMA_RS08875O26314Positive2099239 - 209999729010.5
atp-binding proteinCYCMA_RS08880Not AvailablePositive2100039 - 210044015085.0
rrna maturation rnase ybeyCYCMA_RS08885Q11PC9Positive2100442 - 210089117687.0
trna uridine-5-carboxymethylaminomethyl(34) synthesis enzyme mnmgCYCMA_RS08890Q11PC8Positive2100945 - 210281069754.0
class i sam-dependent methyltransferaseCYCMA_RS08895Not AvailablePositive2102812 - 210369934533.6
ig-like domain-containing domainCYCMA_RS08900Not AvailablePositive2103696 - 210545067074.9
marr family winged helix-turn-helix transcriptional regulatorCYCMA_RS08905Not AvailablePositive2106302 - 210673616437.0
3-hydroxyacyl-coa dehydrogenase/enoyl-coa hydratase family proteinCYCMA_RS08910O32178Positive2106779 - 210918489785.7
thiolase family proteinCYCMA_RS08915O32177Positive2109272 - 211044441774.8

Displaying genes 1761 – 1770 of 5010 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

215 records
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Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000047sophoroseC12H22O11Chemical structure of sophoroseNot available
Average342.297Da
Monoisotopic342.116211528Da
BASm0000122echinenoneC40H54OChemical structure of echinenoneNot available
Average550.871Da
Monoisotopic550.417466359Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000275keto-D-sorboseC6H12O6Chemical structure of keto-D-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000315acetylpyruvateC5H6O4Chemical structure of acetylpyruvateNot available
Average130.099Da
Monoisotopic130.0266087Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da

Displaying 1–10 of 215 metabolites

Health Effects

No health effects information available for this bacterium.