Shinella sp. HZN7

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Shinella

Description

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusShinella
SpeciesShinella sp. HZN7
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatactive sludge of a wastewater-treatment system
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Shinella sp. HZN7 plasmid pShin-01, complete sequence.

Gene Summary

Adenine Count

102122 bp

Thymine Count

107513 bp

Guanine Count

206401 bp

Cytosine Count

204503 bp

Genome Length

620539 bp

Protein-coding Genes

586 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

13

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
transcriptional regulator ldtrshn_RS06600Not AvailablePositive1372549 - 137306119569.5
murein l,d-transpeptidaseshn_RS06605Not AvailablePositive1373347 - 137466948533.5
serine hydroxymethyltransferaseshn_RS06610Q8UG75Positive1374861 - 137615946786.0
transcriptional regulator nrdrshn_RS06615P58259Positive1376169 - 137664817994.5
bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase ribdshn_RS06620O66534Positive1376682 - 137793842914.5
riboflavin synthaseshn_RS06625Q2YN92Positive1377938 - 137855522143.3
diguanylate cyclaseshn_RS06630Q73RG3Positive1378689 - 137982540534.6
cupin domain-containing proteinshn_RS06635Not AvailableNegative1379832 - 138033517734.9
6,7-dimethyl-8-ribityllumazine synthaseshn_RS06640Q92QU0Positive1380533 - 138099416227.3
transcription antitermination factor nusbshn_RS06645C3M9I9Positive1380991 - 138147317896.4

Displaying genes 2941 – 2950 of 7132 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

60 records
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Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm00002634-(hydroxymethyl)benzenesulfonateC7H7O4SChemical structure of 4-(hydroxymethyl)benzenesulfonateNot available
Average187.19Da
Monoisotopic187.007053459Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm00005275-oxopentanoateC5H7O3Chemical structure of 5-oxopentanoateNot available
Average115.109Da
Monoisotopic115.040067665Da
BASm00007052-dehydro-3-deoxy-D-arabinonateC5H7O5Chemical structure of 2-dehydro-3-deoxy-D-arabinonateNot available
Average147.107Da
Monoisotopic147.0298969Da
BASm0000738D-lyxoseC5H10O5Chemical structure of D-lyxose1114-34-7
Average150.1299Da
Monoisotopic150.05282343Da
BASm0000950L-xyluloseC5H10O5Chemical structure of L-xylulose527-50-4
Average150.1299Da
Monoisotopic150.05282343Da
BASm0001086scyllo-inososeC6H10O6Chemical structure of scyllo-inososeNot available
Average178.14Da
Monoisotopic178.0477381Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da
BASm0001327L-fuconateC6H11O6Chemical structure of L-fuconateNot available
Average179.149Da
Monoisotopic179.0561117Da
BASm0001362octadecanoateC18H35O2Chemical structure of octadecanoateNot available
Average283.4693Da
Monoisotopic283.263705364Da

Displaying 1–10 of 60 metabolites

Health Effects

No health effects information available for this bacterium.