Escherichia coli 2.3916

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli 2.3916 is a Gram-negative, rod-shaped bacterium commonly found in pairs or as single cells. This strain thrives optimally at a temperature of 37.0°C, which is indicative of its adaptation to the warm-blooded hosts in which it typically resides. As a facultative anaerobe, E. coli 2.3916 possesses the metabolic flexibility to grow in both aerobic and anaerobic environments, allowing it to colonize various niches within its host. The habitat of E. coli 2.3916 is primarily host-associated, suggesting a close relationship with its host organisms. This association may facilitate its survival and proliferation, as it can exploit the host's nutrients while adapting to fluctuating oxygen levels. The ability to exist in diverse environments underscores the adaptability of this strain, which may play a role in the complex microbial communities found within the gastrointestinal tracts of mammals. The characteristics of E. coli 2.3916 highlight its potential role in host health and microbiome dynamics. Understanding the specific interactions and contributions of this strain to the host environment could provide insights into the broader ecological implications of E. coli within the gut microbiome and its influence on host physiology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
Strain2.3916

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli 2.3916
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Escherichia coli 2.3916 ctg1127168676001, whole genome shotgun

Gene Summary

Adenine Count

1394943 bp

Thymine Count

1389033 bp

Guanine Count

1419341 bp

Cytosine Count

1435982 bp

Genome Length

5639302 bp

Protein-coding Genes

5453 genes

Non-Coding Genes

702 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
pf04222 domain proteinEC23916_5249P32680Positive1590144 - 159073422613.9
dna-binding protein huEC23916_5250P0ACF2Positive1590921 - 15911939535.51
pf07356 family proteinEC23916_5251P32681Positive1591266 - 159190123997.1
zinc resistance proteinEC23916_5252P0AAB0Negative1591903 - 159232815200.3
hypothetical proteinEC23916_5253Not AvailableNegative1592331 - 15924595024.87
ghkl domain proteinEC23916_5254P14377Positive1592566 - 159396351034.9
transcriptional regulator zrarEC23916_5256P14375Positive1593960 - 159528548397.4
phosphoribosylamine--glycine ligaseEC23916_5255P15640Negative1595282 - 159657145943.0
phosphoribosylaminoimidazolecarboxamide formyltransferase/imp cyclohydrolaseEC23916_5257B7LAV3Negative1596583 - 159817257332.4
hypothetical proteinEC23916_5258Not AvailablePositive1598290 - 15984124711.55

Displaying genes 2371 – 2380 of 6155 in total

Metabolites

4787 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 4787 metabolites

Health Effects

No health effects information available for this bacterium.