Escherichia coli 2.3916

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli 2.3916 is a Gram-negative, rod-shaped bacterium commonly found in pairs or as single cells. This strain thrives optimally at a temperature of 37.0°C, which is indicative of its adaptation to the warm-blooded hosts in which it typically resides. As a facultative anaerobe, E. coli 2.3916 possesses the metabolic flexibility to grow in both aerobic and anaerobic environments, allowing it to colonize various niches within its host. The habitat of E. coli 2.3916 is primarily host-associated, suggesting a close relationship with its host organisms. This association may facilitate its survival and proliferation, as it can exploit the host's nutrients while adapting to fluctuating oxygen levels. The ability to exist in diverse environments underscores the adaptability of this strain, which may play a role in the complex microbial communities found within the gastrointestinal tracts of mammals. The characteristics of E. coli 2.3916 highlight its potential role in host health and microbiome dynamics. Understanding the specific interactions and contributions of this strain to the host environment could provide insights into the broader ecological implications of E. coli within the gut microbiome and its influence on host physiology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
Strain2.3916

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli 2.3916
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Escherichia coli 2.3916


Gene Summary

Adenine Count

1394943 bp

Thymine Count

1389033 bp

Guanine Count

1419341 bp

Cytosine Count

1435982 bp

Genome Length

5639302 bp

Protein-coding Genes

5453 genes

Non-Coding Genes

702 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
Tail proteinEC23916_4307Not Available-48927 - 490244178.21
Tail tape measure proteinEC23916_4308Not Available-49037 - 5013139010.5
Tail tape measure proteinEC23916_4309E7DNB6-50143 - 5184360553.1
Gpe family tail proteinEC23916_4310Not Available-51830 - 519584685.47
Tail proteinEC23916_4311Not Available-52050 - 5235811498.8
Major tail tube proteinEC23916_4312Not Available-52413 - 5292518879.6
Tail sheath family proteinEC23916_4313Not Available-52925 - 5410943520.5
Trna-tyr;Not AvailableNot Available+53956 - 54040Not Available
Hypothetical proteinEC23916_4314Not Available+54089 - 542204865.71
Bacteriop2 gpd proteinEC23916_4315P21679+54267 - 5527737427.4

Displaying genes 1 – 10 of 6155 in total

Metabolites

325 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da

Displaying 1–10 of 325 metabolites