Escherichia coli DEC2E

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli DEC2E is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This microbe is classified as a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic environments. E. coli DEC2E has an optimal growth temperature of 37.0°C, which aligns with the typical body temperature of warm-blooded hosts, suggesting that it is well-adapted to a host-associated habitat. As a member of the Escherichia genus, DEC2E shares common characteristics with other E. coli strains, but specific strain-level traits remain to be elucidated. The facultative anaerobic metabolism of E. coli DEC2E enables it to exploit a range of environments, potentially allowing it to adapt to varying conditions within different host systems. This versatility may play a significant role in its survival and persistence in host-associated niches. The association of E. coli DEC2E with hosts implies a potential for complex interactions within the microbiome, where it may contribute to nutrient cycling or influence host health. Understanding the specific ecological roles of E. coli DEC2E within its host could provide insights into its broader biological significance in microbial communities and host interactions.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
StrainDEC2E

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli DEC2E
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Escherichia coli DEC2E gecDEC2E.contig.77_1, whole genome shotgun

Gene Summary

Adenine Count

1292076 bp

Thymine Count

1283599 bp

Guanine Count

1313400 bp

Cytosine Count

1316609 bp

Genome Length

5205684 bp

Protein-coding Genes

4882 genes

Non-Coding Genes

557 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
amidohydrolase family proteinECDEC2E_4787Not AvailablePositive4616486 - 461765242222.7
sugar (and other) transporter family proteinECDEC2E_4788Not AvailablePositive4617695 - 461901147111.5
fabr transcriptional repressor fabr transcriptional dual regulatorECDEC2E_4789Not AvailablePositive4619118 - 461976524405.3
hypothetical proteinECDEC2E_4790Not AvailablePositive4619765 - 462012413024.3
trna (uracil-5-)-methyltransferaseECDEC2E_4791Not AvailableNegative4620164 - 462126441968.4
tonb-dependent vitamin b12 receptorECDEC2E_4792Not AvailablePositive4621633 - 462351669629.4
glutamate racemaseECDEC2E_4793Not AvailablePositive4623530 - 462431828725.1
Trna-gluNot AvailableNot AvailablePositive4626317 - 4626392Not Available
udp-n-acetylenolpyruvoylglucosamine reductaseECDEC2E_4799Not AvailablePositive4630217 - 463124537858.1
biotin operon repressorECDEC2E_4800Not AvailablePositive4631242 - 463220735426.2

Displaying genes 4861 – 4870 of 5439 in total

Metabolites

4785 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 4785 metabolites

Health Effects

No health effects information available for this bacterium.