Escherichia coli DEC2C

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli DEC2C is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain is classified as a facultative anaerobe, indicating its ability to grow in both aerobic and anaerobic conditions. The optimal growth temperature for E. coli DEC2C is approximately 37.0°C, which aligns with the physiological temperature of many host organisms, suggesting a close adaptation to host-associated environments. The habitat of E. coli DEC2C is primarily associated with hosts, which may include various mammals. This association implies a potential role in the microbiota of these hosts, where it may contribute to various biological processes, including nutrient metabolism and gut health. The ability of E. coli DEC2C to thrive in fluctuating oxygen levels could provide it with a competitive advantage in the complex and variable environments found within host organisms. Understanding the traits of E. coli DEC2C may offer insights into the ecological roles of similar bacteria in host-associated ecosystems, particularly in relation to their adaptability and interactions with host physiology. Such knowledge could potentially inform studies on microbial community dynamics and the influence of gut microbiota on host health.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
StrainDEC2C

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli DEC2C
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Escherichia coli DEC2C gecDEC2C.contig.93_1, whole genome shotgun

Gene Summary

Adenine Count

1317636 bp

Thymine Count

1311477 bp

Guanine Count

1335270 bp

Cytosine Count

1333668 bp

Genome Length

5298052 bp

Protein-coding Genes

4992 genes

Non-Coding Genes

620 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
rcnr transcriptional repressorECDEC2C_2548Not AvailableNegative2378328 - 237860010134.5
high-affinity nickel-transport family proteinECDEC2C_2549Not AvailablePositive2378721 - 237955130683.4
hypothetical proteinECDEC2C_2550Not AvailablePositive2379770 - 238010812466.8
transposase, is4 famillyECDEC2C_2551Not AvailableNegative2380142 - 238098732324.1
histidine acid phosphatase family proteinECDEC2C_2552Not AvailableNegative2381704 - 238294545720.5
putative chaperone dnajECDEC2C_2553Not AvailablePositive2383480 - 238440034559.0
modulator of cbpa co-chaperoneECDEC2C_2554Not AvailablePositive2384400 - 238470511475.9
chaperone protein for trimethylamine-n-oxide oxidoreductase iECDEC2C_2555Not AvailableNegative2384960 - 238555922323.6
trimethylamine-n-oxide reductase toraECDEC2C_2556Not AvailableNegative2385556 - 238810294618.4
trimethylamine-n-oxide reductase c-type cytochrome torcECDEC2C_2557Not AvailableNegative2388102 - 238927443612.8

Displaying genes 2791 – 2800 of 5612 in total

Metabolites

4785 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 4785 metabolites

Health Effects

No health effects information available for this bacterium.