Escherichia coli DEC1B

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli DEC1B is a rod-shaped, Gram-negative bacterium that typically exists in pairs or as single cells. This strain thrives optimally at 37.0°C, which aligns with the average body temperature of its host organisms. As a facultative anaerobe, E. coli DEC1B can adapt its metabolic processes to utilize both aerobic and anaerobic conditions, enabling it to survive in diverse environments associated with its host. The habitat of E. coli DEC1B is host-associated, suggesting a potential role in the normal microbiota of its host and possibly contributing to various physiological processes. While the specific interactions and functions of this strain within its host are not detailed, it is well established that members of the E. coli species play crucial roles in gut health, including nutrient absorption, synthesis of vitamins, and competition against pathogenic microorganisms. Given its adaptability to different oxygen levels and its optimal growth temperature, E. coli DEC1B may exhibit behaviors that facilitate its survival and proliferation in the dynamic environments of the gastrointestinal tract. This characteristic adaptability highlights the ecological importance of E. coli strains, including DEC1B, in maintaining the balance of microbial communities within their host environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
StrainDEC1B

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli DEC1B
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Escherichia coli DEC1B gecDEC1B.contig.88_1, whole genome shotgun

Gene Summary

Adenine Count

1294015 bp

Thymine Count

1285271 bp

Guanine Count

1309759 bp

Cytosine Count

1309334 bp

Genome Length

5198379 bp

Protein-coding Genes

5000 genes

Non-Coding Genes

479 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
response regulatorECDEC1B_1392Not AvailableNegative1331504 - 133217525522.7
adenylosuccinate lyaseECDEC1B_1393Not AvailableNegative1332344 - 133371451545.7
lysogenization regulatorECDEC1B_1394Not AvailableNegative1333718 - 133435922935.0
trna (5-methylaminomethyl-2-thiouridylate)-methyltransferaseECDEC1B_1395Not AvailableNegative1334395 - 133550140931.7
nudix domain proteinECDEC1B_1396Not AvailableNegative1335555 - 133601617433.8
23s rrna pseudouridine synthaseECDEC1B_1397Not AvailableNegative1336026 - 133655920057.0
isocitrate dehydrogenase, nadp-dependentECDEC1B_1398Not AvailablePositive1336852 - 133810245758.4
hypothetical proteinECDEC1B_1399Not AvailableNegative1338364 - 133876815849.1
putative transcriptional regulator predicted dna-binding transcriptional regulatorECDEC1B_1400Not AvailableNegative1338989 - 133972028205.0
blue light-responsive regulator of ycgeECDEC1B_1401Not AvailableNegative1339925 - 134113645404.7

Displaying genes 1731 – 1740 of 5479 in total

Metabolites

4785 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 4785 metabolites

Health Effects

No health effects information available for this bacterium.