Weeksella virosa DSM 16922

Gram-negativeRodNon-motileAerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Weeksellaceae

Genus

Weeksella

Description

Weeksella virosa (strain ATCC 43766 / DSM 16922 / JCM 21250 / NBRC 16016 / NCTC 11634 / CL345/78) is a strictly aerobic, chemoorganotrophic, nonsaccharolytic Gram-negative bacterium isolated from genitourinary tract samples, predominantly from women, in North Carolina, USA. W. virosa are also detected by cultural methods in the oral cavity, the genitourinary tract of man, in clinical specimens of pigs, the urine of a cow with bladder carcinoma, and in the midgut of a Brazilian dipteran. W. virosa occurs mainly as an inhabitant of mucosa of warm-blooded animals and healthy man. The cells are rod-shaped with parallel sides and rounded ends. Colonies on nutrient agar appear circular and low convex with entire edges, smooth, shining and mucoid, reaching 2mm in diameter after 24h. Most strains produce a diffusible dark brown pigment on tyrosine-containing agar. W. virosa grows at 42 degrees Celsius but not at 5 degrees Celsius. It is able to utilize beta-hydroxybutyrate as a substrate and to produce indole. W.virosa is susceptible to most beta-lactams, tetracycline, chloramphenicol, nalidixic acid, erythromycin and sulfamethox-azole-trimethoprim. (Adapted from: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3072086/pdf/sigs.1603927.pdf). (EBI Integr8)

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyWeeksellaceae
GenusWeeksella
SpeciesWeeksella virosa
StrainDSM 16922

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Weeksella virosa DSM 16922
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy source Chemoorganotroph
PathogenicityNo

Genome Summary

Weeksella virosa DSM 16922, complete sequence.

Gene Summary

Adenine Count

726687 bp

Thymine Count

729783 bp

Guanine Count

407887 bp

Cytosine Count

408597 bp

Genome Length

2272954 bp

Protein-coding Genes

2090 genes

Non-Coding Genes

95 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
susc/raga family tonb-linked outer membrane proteinWEEVI_RS10035Not AvailablePositive2091712 - 2094789114748.0
ragb/susd family nutrient uptake outer membrane proteinWEEVI_RS10040Not AvailablePositive2094794 - 209611350064.2
phosphodiester glycosidase family proteinWEEVI_RS10045Not AvailablePositive2096113 - 209704235164.6
isocitrate lyase/phosphoenolpyruvate mutase family proteinWEEVI_RS11185Not AvailablePositive2097299 - 209756810141.9
t9ss type a sorting domain-containing proteinWEEVI_RS10055Not AvailableNegative2097739 - 209857830871.8
transposaseWEEVI_RS11650Not AvailablePositive2099108 - 20993027716.19
integrase core domain-containing proteinWEEVI_RS11655Not AvailablePositive2099260 - 209964314777.4
eco57i restriction-modification methylase domain-containing proteinWEEVI_RS10070Not AvailablePositive2099864 - 2103217129462.0
taqi-like c-terminal specificity domain-containing proteinWEEVI_RS11195Not AvailableNegative2103201 - 210386926349.4
is3 family transposaseWEEVI_RS10080Not AvailableNegative2103912 - 210470931512.7

Displaying genes 2031 – 2040 of 2185 in total

Metabolites

169 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da
BASm00012442-succinylbenzoateC11H8O5Chemical structure of 2-succinylbenzoate27415-09-04
Average220.181Da
Monoisotopic220.038270517Da
BASm0001462ubiquinone-0C9H10O4Chemical structure of ubiquinone-0605-94-7
Average182.1733Da
Monoisotopic182.057908808Da
BASm00016962-heptyl-3-hydroxy-4(1H)-quinoloneC16H21NO2Chemical structure of 2-heptyl-3-hydroxy-4(1H)-quinoloneNot available
Average259.349Da
Monoisotopic259.15722892Da
BASm0001808corynebactinC39H42N6O18Chemical structure of corynebactinNot available
Average882.789Da
Monoisotopic882.2555585Da
BASm0002146(1R,2S)-1,2-dihydronaphthalene-1,2-diolC10H10O2Chemical structure of (1R,2S)-1,2-dihydronaphthalene-1,2-diolNot available
Average162.1852Da
Monoisotopic162.0680796Da

Displaying 1–10 of 169 metabolites

Health Effects

No health effects information available for this bacterium.